Transcript: lnc-IRF1-2:2

Basic information

LNCipedia transcript ID: lnc-IRF1-2:2 
LNCipedia gene ID: lnc-IRF1-2
Ensembl Gene ID: ENSG00000238160
Ensembl Transcript ID: ENST00000422204
Location (hg38): chr5:132425381-132426454
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 405 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000422204.1; AC116366.5-002; OTTHUMT00000132337.1; NONHSAT103752
Alternative gene names: ENSG00000238160.1; AC116366.5; OTTHUMG00000059494.1; AC116366.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.0229 non-coding 
CPAT coding probability 1.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRF1-2:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRF1-2:2
4.0 lnc-IRF1-2:2
4.1 lnc-IRF1-2:2
5.0 lnc-IRF1-2:2
5.1 lnc-TIFAB-72:7
5.2 lnc-IRF1-2:2