Transcript: lnc-IRF1-2:4

Basic information

LNCipedia transcript ID: lnc-IRF1-2:4 
LNCipedia gene ID: lnc-IRF1-2
Location (hg38): chr5:132419416-132426675
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 728 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000238160.1|ENST00000454380.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -121.0337 non-coding 
CPAT coding probability 4.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRF1-2:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-IRF1-2:4
5.0 lnc-IRF1-2:4
5.1 lnc-TIFAB-72:3
5.2 lnc-IRF1-2:4