Transcript: lnc-IRF2BP2-1:1

Basic information

LNCipedia transcript ID: lnc-IRF2BP2-1:1 
LNCipedia gene ID: lnc-IRF2BP2-1
Ensembl Gene ID: ENSG00000230628
Ensembl Transcript ID: ENST00000442382
Location (hg38): chr1:234669523-234696153
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3564 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000764; ENST00000442382; ENST00000442382.1; RP4-781K5.6-001; OTTHUMT00000092708.1; NONHSAT010300
Alternative gene names: XLOC_001262; linc-IRF2BP2-5; ENSG00000230628; RP4-781K5.6; ENSG00000230628.1; OTTHUMG00000037983.1; AL160408.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4864 non-coding 
CPAT coding probability 10.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRF2BP2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRF2BP2-1:1
3.1 lnc-IRF2BP2-1:1
4.0 lnc-IRF2BP2-1:1
4.1 lnc-IRF2BP2-1:1
5.0 lnc-IRF2BP2-1:1
5.1 lnc-SIPA1L2-33:1
5.2 lnc-IRF2BP2-1:1