Transcript: lnc-IRS1-2:1

Basic information

LNCipedia transcript ID: lnc-IRS1-2:1 
LNCipedia gene ID: lnc-IRS1-2
Ensembl Gene ID: ENSG00000235070
Ensembl Transcript ID: ENST00000423838
Location (hg38): chr2:226180044-226185371
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1134 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003502; ENST00000423838; ENST00000423838.1; AC068138.1-001; OTTHUMT00000331297.1; NONHSAT077184
Alternative gene names: XLOC_002504; linc-DOCK10-2; ENSG00000235070; AC068138.1; ENSG00000235070.3; OTTHUMG00000153471.1; AC062015.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -180.1256 non-coding 
CPAT coding probability 4.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRS1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRS1-2:1
3.1 lnc-IRS1-2:1
4.0 lnc-IRS1-2:1
4.1 lnc-IRS1-2:1
5.0 lnc-IRS1-2:1
5.1 lnc-WDFY1-17:5
5.2 lnc-IRS1-2:1