Transcript: lnc-IRS4-3:2

Basic information

LNCipedia transcript ID: lnc-IRS4-3:2 
LNCipedia gene ID: lnc-IRS4-3
Ensembl Gene ID: ENSG00000261409
Ensembl Transcript ID: ENST00000564206
Location (hg38): chrX:108719949-108724944
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 4996 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564206.1; RP6-24A23.7-001; OTTHUMT00000430275.1; NONHSAT138142
Alternative gene names: ENSG00000261409.1; RP6-24A23.7; OTTHUMG00000175497.1; AL035425.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -26.4557 non-coding 
CPAT coding probability 0.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRS4-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-RP6-24A23.6.1-1:2
4.0 lnc-RP6-24A23.6.1-1:2
4.1 lnc-RP6-24A23.6.1-1:2
5.0 lnc-RP6-24A23.6.1-1:2
5.1 lnc-RAB40A-66:2
5.2 lnc-IRS4-3:2