Transcript: lnc-IRX1-5:1

Basic information

LNCipedia transcript ID: lnc-IRX1-5:1 
LNCipedia gene ID: lnc-IRX1-5
Location (hg38): chr5:3178095-3181232
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 389 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00009330; ENST00000505396; ENST00000505396.1; CTD-2029E14.1-001; OTTHUMT00000365505.1; NONHSAT100115
Alternative gene names: XLOC_004259; linc-IRX1-5; ENSG00000249808; CTD-2029E14.1; ENSG00000249808.1; OTTHUMG00000161608.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.6486 non-coding 
CPAT coding probability 7.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRX1-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX1-5:1
3.1 lnc-IRX1-5:1
4.0 lnc-IRX1-5:1
4.1 lnc-IRX1-5:1
5.0 lnc-IRX1-5:1
5.1 lnc-CARD6-347:4
5.2 lnc-IRX1-5:1