Transcript: lnc-IRX1-5:3

Basic information

LNCipedia transcript ID: lnc-IRX1-5:3 
LNCipedia gene ID: lnc-IRX1-5
Location (hg38): chr5:3177814-3180981
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 420 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_24820_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.6486 non-coding 
CPAT coding probability 0.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRX1-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRX1-5:3
4.0 lnc-IRX1-5:3
4.1 lnc-IRX1-5:3
5.0 lnc-IRX1-5:3
5.1 lnc-CARD6-347:2
5.2 lnc-IRX1-5:3