Transcript: lnc-IRX1-5:4

Basic information

LNCipedia transcript ID: lnc-IRX1-5:4 
LNCipedia gene ID: lnc-IRX1-5
Ensembl Gene ID: ENSG00000249808
Ensembl Transcript ID: ENST00000505396
RefSeq ID: NR_104617
Location (hg38): chr5:3177835-3181232
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 649 bp
Exons: 2
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_104617; ENST00000505396.2; NR_104617.1
Alternative gene names: ENSG00000249808.2; LINC01377


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.6486 non-coding 
CPAT coding probability 7.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRX1-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRX1-5:4
4.0 lnc-IRX1-5:4
4.1 lnc-IRX1-5:4
5.0 lnc-IRX1-5:4
5.1 lnc-CARD6-347:3
5.2 lnc-IRX1-5:4