Transcript: lnc-IRX2-6:1

Basic information

LNCipedia transcript ID: lnc-IRX2-6:1 
LNCipedia gene ID: lnc-IRX2-6
Ensembl Gene ID: ENSG00000248962
Ensembl Transcript ID: ENST00000513859
Location (hg38): chr5:4012708-4013649
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 559 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009585; ENST00000513859; ENST00000513859.1; CTD-2287N17.1-001; OTTHUMT00000365548.1; NONHSAT100131
Alternative gene names: XLOC_004714; linc-IRX2-8; ENSG00000248962; CTD-2287N17.1; ENSG00000248962.1; OTTHUMG00000161634.1; AC025773.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.2302 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRX2-6:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-IRX2-5:1
3.1 lnc-IRX2-6:1
4.0 lnc-IRX2-6:1
4.1 lnc-IRX2-6:1
5.0 lnc-IRX2-6:1
5.1 lnc-IRX2-6:1
5.2 lnc-IRX2-6:1