Transcript: lnc-IRX3-8:1

Basic information

LNCipedia transcript ID: lnc-IRX3-8:1 
LNCipedia gene ID: lnc-IRX3-8
Location (hg38): chr16:54406504-54413615
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7112 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA545:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -1.1469 non-coding 
CPAT coding probability 4.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IRX3-8:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-IRX3-8:1
4.1 lnc-IRX3-8:1
5.0 lnc-IRX3-8:1
5.1 lnc-CFAP20-87:1
5.2 lnc-IRX3-8:1