Transcript: lnc-IRX5-6:1

Basic information

LNCipedia transcript ID: lnc-IRX5-6:1 
LNCipedia gene ID: lnc-IRX5-6
Location (hg38): chr16:54666456-54694531
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3557 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_1336_chr16:54700367-54728149_testes
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.4616 non-coding 
CPAT coding probability 96.27% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-IRX5-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IRX5-6:1
4.0 lnc-IRX5-6:1
4.1 lnc-IRX5-6:1
5.0 lnc-IRX5-6:1
5.1 lnc-ADGRG1-78:1
5.2 lnc-IRX5-6:1