Transcript: lnc-ISG15-5:1

Basic information

LNCipedia transcript ID: lnc-ISG15-5:1 
LNCipedia gene ID: lnc-ISG15-5
Ensembl Gene ID: ENSG00000242590
Ensembl Transcript ID: ENST00000418300
Location (hg38): chr1:1055033-1056116
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 402 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418300.1; RP11-54O7.14-001; OTTHUMT00000097999.1; NONHSAT000228
Alternative gene names: ENSG00000242590.1; RP11-54O7.14; OTTHUMG00000040780.1; AL645608.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -224.349 non-coding 
CPAT coding probability 8.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ISG15-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AGRN-1:1
4.0 lnc-AGRN-1:1
4.1 lnc-AGRN-1:1
5.0 lnc-AGRN-1:1
5.1 lnc-VAMP3-114:1
5.2 lnc-ISG15-5:1