Transcript: lnc-ITGAL-2:2

Basic information

LNCipedia transcript ID: lnc-ITGAL-2:2 
LNCipedia gene ID: lnc-ITGAL-2
Location (hg38): chr16:30535073-30537144
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1124 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011
Alternative transcript names: ENST00000457283
Alternative gene names: ENSG00000235560; AC002310.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.6303 non-coding 
CPAT coding probability 0.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGAL-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITGAL-2:1
3.1 lnc-ITGAL-2:2
4.0 lnc-ITGAL-2:2
4.1 lnc-ITGAL-2:2
5.0 lnc-ITGAL-2:2
5.1 lnc-ZNF646-58:8
5.2 lnc-ITGAL-2:2