Transcript: lnc-ITGAL-2:3

Basic information

LNCipedia transcript ID: lnc-ITGAL-2:3 
LNCipedia gene ID: lnc-ITGAL-2
Ensembl Gene ID: ENSG00000235560
Ensembl Transcript ID: ENST00000569752
Location (hg38): chr16:30535111-30536199
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 752 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569752.1; AC002310.12-002; OTTHUMT00000434398.1; NONHSAT141764
Alternative gene names: ENSG00000235560.3; AC002310.12; OTTHUMG00000176947.1; AC002310.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -11.6303 non-coding 
CPAT coding probability 4.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGAL-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGAL-2:3
4.0 lnc-ITGAL-2:3
4.1 lnc-ITGAL-2:3
5.0 lnc-ITGAL-2:3
5.1 lnc-ZNF646-58:9
5.2 lnc-ITGAL-2:3