Transcript: lnc-ITGAL-2:5

Basic information

LNCipedia transcript ID: lnc-ITGAL-2:5 
LNCipedia gene ID: lnc-ITGAL-2
Location (hg38): chr16:30535058-30536860
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 805 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000235560.3|FTMT26300009848.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -11.6303 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGAL-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ITGAL-2:5
5.0 lnc-ITGAL-2:5
5.1 lnc-ZNF646-58:3
5.2 lnc-ITGAL-2:5