Transcript: lnc-ITGB2-3:2

Basic information

LNCipedia transcript ID: lnc-ITGB2-3:2 
LNCipedia gene ID: lnc-ITGB2-3
Location (hg38): chr21:44978737-44979218
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 405 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00029181; NONHSAT082904
Alternative gene names: XLOC_014119; linc-ITGB2-1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 6.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGB2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C21orf67-1:2
3.1 lnc-C21orf67-1:2
4.0 lnc-C21orf67-1:2
4.1 lnc-C21orf67-1:2
5.0 lnc-C21orf67-1:2
5.1 lnc-POFUT2-1:3
5.2 lnc-ITGB2-3:2