Transcript: lnc-ITGB7-1:1

Basic information

LNCipedia transcript ID: lnc-ITGB7-1:1 
LNCipedia gene ID: lnc-ITGB7-1
Location (hg38): chr12:53157789-53176428
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2482 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000548129; ENST00000548129.1; RP11-1136G11.7-001; OTTHUMT00000406888.1; NONHSAT028415
Alternative gene names: ENSG00000257479; RP11-1136G11.7; ENSG00000257479.1; OTTHUMG00000170025.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.4912 non-coding 
CPAT coding probability 6.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGB7-1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITGB7-1:1
3.1 lnc-ITGB7-1:1
4.0 lnc-ITGB7-1:1
4.1 lnc-ITGB7-1:1
5.0 lnc-ITGB7-1:1
5.1 lnc-SPRYD3-2:1
5.2 lnc-ITGB7-1:1