Transcript: lnc-ITGB8-1:2

Basic information

LNCipedia transcript ID: lnc-ITGB8-1:2 
LNCipedia gene ID: lnc-ITGB8-1
Ensembl Gene ID: ENSG00000226097
Ensembl Transcript ID: ENST00000453564
Location (hg38): chr7:20298294-20300625
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 376 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Hangauer et al., 2013; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000453564; ENST00000453564.1; AC099342.1-003; OTTHUMT00000326474.1; NONHSAT119421; FPKM1_group_29281_transcript_1
Alternative gene names: ENSG00000226097; AC099342.1; ENSG00000226097.1; OTTHUMG00000152502.1; ENSG00000226097.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.5749 non-coding 
CPAT coding probability 3.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITGB8-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITGB8-1:2
3.1 lnc-ITGB8-1:2
4.0 lnc-ITGB8-1:2
4.1 lnc-ITGB8-1:2
5.0 lnc-ITGB8-1:2
5.1 lnc-AHR-38:2
5.2 lnc-ITGB8-1:2