Transcript: lnc-ITIH2-5:1

Basic information

LNCipedia transcript ID: lnc-ITIH2-5:1 
LNCipedia gene ID: lnc-ITIH2-5
Ensembl Gene ID: ENSG00000223581
Ensembl Transcript ID: ENST00000420049
Location (hg38): chr10:7097152-7097675
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 436 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420049; ENST00000420049.1; RP11-393K12.2-001; OTTHUMT00000046671.1; NONHSAT011274
Alternative gene names: ENSG00000223581; RP11-393K12.2; ENSG00000223581.1; OTTHUMG00000017628.1; AL590095.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.1547 non-coding 
CPAT coding probability 3.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITIH2-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITIH2-5:1
3.1 lnc-ITIH2-5:1
4.0 lnc-ITIH2-5:1
4.1 lnc-ITIH2-5:1
5.0 lnc-ITIH2-5:1
5.1 lnc-NPY4R2-443:1
5.2 lnc-ITIH2-5:1