Transcript: lnc-ITM2C-1:7

Basic information

LNCipedia transcript ID: lnc-ITM2C-1:7 
LNCipedia gene ID: lnc-ITM2C-1
RefSeq ID: NR_038238
Location (hg38): chr2:230886546-230904517
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1893 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT077308; NR_038238; NR_038238.1
Alternative gene names: LOC151484


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -112.1426 non-coding 
CPAT coding probability 69.31% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ITM2C-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITM2C-1:7
4.0 lnc-ITM2C-1:7
4.1 lnc-ITM2C-1:7
5.0 lnc-ITM2C-1:7
5.1 lnc-ARMC9-10:9
5.2 lnc-ITM2C-1:7