Transcript: lnc-ITM2C-2:9

Basic information

LNCipedia transcript ID: lnc-ITM2C-2:9 
LNCipedia gene ID: lnc-ITM2C-2
Ensembl Gene ID: ENSG00000283164
Ensembl Transcript ID: ENST00000637275
Location (hg38): chr2:230924567-230929919
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 504 bp
Exons: 3
Sources: Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000637275.1
Alternative gene names: ENSG00000283164.1; RP11-499P1.2; AC012507.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -26.6944 non-coding 
CPAT coding probability 33.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITM2C-2:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-ITM2C-2:9
5.0 lnc-ITM2C-2:9
5.1 lnc-ARMC9-9:9
5.2 lnc-ITM2C-2:9