Transcript: lnc-ITPR3-1:11

Basic information

LNCipedia transcript ID: lnc-ITPR3-1:11 
LNCipedia gene ID: lnc-ITPR3-1
Location (hg38): chr6:33914084-33924683
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 567 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011295; NONHSAT111981
Alternative gene names: XLOC_005263; linc-HMGA1-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.3671 non-coding 
CPAT coding probability 3.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITPR3-1:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITPR3-1:11
3.1 lnc-ITPR3-1:11
4.0 lnc-ITPR3-1:11
4.1 lnc-ITPR3-1:11
5.0 lnc-ITPR3-1:11
5.1 lnc-TNF-107:14
5.2 lnc-ITPR3-1:11