Transcript: lnc-ITPR3-1:4

Basic information

LNCipedia transcript ID: lnc-ITPR3-1:4 
LNCipedia gene ID: lnc-ITPR3-1
Ensembl Gene ID: ENSG00000233183
Ensembl Transcript ID: ENST00000526556
Location (hg38): chr6:33893323-33914410
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 391 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000526556; ENST00000526556.1; RP3-468B3.2-002; OTTHUMT00000389018.1
Alternative gene names: ENSG00000233183; RP3-468B3.2; ENSG00000233183.2; OTTHUMG00000014537.3; AL138889.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -257.4636 non-coding 
CPAT coding probability 8.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITPR3-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITPR3-1:4
3.1 lnc-ITPR3-1:4
4.0 lnc-ITPR3-1:4
4.1 lnc-ITPR3-1:4
5.0 lnc-ITPR3-1:4
5.1 lnc-TNF-107:5
5.2 lnc-ITPR3-1:4