Transcript: lnc-ITPR3-1:7

Basic information

LNCipedia transcript ID: lnc-ITPR3-1:7 
LNCipedia gene ID: lnc-ITPR3-1
Ensembl Gene ID: ENSG00000233183
Ensembl Transcript ID: ENST00000451317
Location (hg38): chr6:33900355-33927631
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3630 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000451317; ENST00000451317.2; RP3-468B3.2-001; OTTHUMT00000040212.3; NONHSAT110770
Alternative gene names: ENSG00000233183; RP3-468B3.2; ENSG00000233183.2; OTTHUMG00000014537.3; AL138889.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.5943 non-coding 
CPAT coding probability 67.43% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-ITPR3-1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ITPR3-1:7
3.1 lnc-ITPR3-1:7
4.0 lnc-ITPR3-1:7
4.1 lnc-ITPR3-1:7
5.0 lnc-ITPR3-1:7
5.1 lnc-TNF-107:9
5.2 lnc-ITPR3-1:7