Transcript: lnc-ITPR3-7:1

Basic information

LNCipedia transcript ID: lnc-ITPR3-7:1 
LNCipedia gene ID: lnc-ITPR3-7
Location (hg38): chr6:33549750-33550174
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 425 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT109003; FPKM1_group_27477_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.9348 non-coding 
CPAT coding probability 2.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ITPR3-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GGNBP1-6:1
4.0 lnc-GGNBP1-6:1
4.1 lnc-GGNBP1-6:1
5.0 lnc-GGNBP1-6:1
5.1 lnc-TNF-97:1
5.2 lnc-ITPR3-7:1