Transcript: lnc-IVNS1ABP-1:1

Basic information

LNCipedia transcript ID: lnc-IVNS1ABP-1:1 
LNCipedia gene ID: lnc-IVNS1ABP-1
Location (hg38): chr1:185331257-185335039
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 609 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000565520.1; GS1-279B7.1-001; OTTHUMT00000085798.1; NONHSAT008419
Alternative gene names: ENSG00000261024.1; GS1-279B7.1; OTTHUMG00000035393.1; ENSG00000261024.2; ENSG00000261024.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -69.1868 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-IVNS1ABP-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IVNS1ABP-1:1
4.0 lnc-IVNS1ABP-1:1
4.1 lnc-IVNS1ABP-1:1
5.0 lnc-IVNS1ABP-1:1
5.1 lnc-MYOG-142:1
5.2 lnc-IVNS1ABP-1:1