Transcript: lnc-JADE2-2:5

Basic information

LNCipedia transcript ID: lnc-JADE2-2:5 
LNCipedia gene ID: lnc-JADE2-2
Ensembl Gene ID: ENSG00000250994
Ensembl Transcript ID: ENST00000513329
Location (hg38): chr5:134436711-134492519
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 714 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009513; ENST00000513329; ENST00000513329.1; AC005355.1-001; OTTHUMT00000371575.1; NONHSAT103858
Alternative gene names: XLOC_004558; linc-PHF15-2; ENSG00000250994; AC005355.1; ENSG00000250994.1; OTTHUMG00000163069.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -128.9423 non-coding 
CPAT coding probability 3.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JADE2-2:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PHF15-2:1
3.1 lnc-PHF15-2:1
4.0 lnc-PHF15-2:1
4.1 lnc-PHF15-2:1
5.0 lnc-PHF15-2:1
5.1 lnc-PDLIM4-51:5
5.2 lnc-JADE2-2:5