Transcript: lnc-JAG1-6:1

Basic information

LNCipedia transcript ID: lnc-JAG1-6:1 
LNCipedia gene ID: lnc-JAG1-6
Ensembl Gene ID: ENSG00000236526
Ensembl Transcript ID: ENST00000439529
Location (hg38): chr20:11909404-11918677
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1831 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439529.1; RP4-742J24.2-001; OTTHUMT00000078023.1; NONHSAT078648
Alternative gene names: ENSG00000236526.1; RP4-742J24.2; OTTHUMG00000031890.1; AL035448.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.7725 non-coding 
CPAT coding probability 7.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JAG1-6:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JAG1-6:1
4.0 lnc-JAG1-6:1
4.1 lnc-JAG1-6:1
5.0 lnc-JAG1-6:1
5.1 lnc-JAG1-6:1
5.2 lnc-JAG1-6:1