Transcript: lnc-JAM2-7:2

Basic information

LNCipedia transcript ID: lnc-JAM2-7:2 
LNCipedia gene ID: lnc-JAM2-7
Ensembl Gene ID: ENSG00000226996
Ensembl Transcript ID: ENST00000434859
Location (hg38): chr21:24043257-24050286
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 847 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028809; ENST00000434859; ENST00000434859.1; AP000477.3-001; OTTHUMT00000171077.1; NONHSAT081440
Alternative gene names: XLOC_013885; linc-JAM2-5; ENSG00000226996; AP000477.3; ENSG00000226996.1; OTTHUMG00000078273.1; ENSG00000226996.5; AP000477.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 15.4181 non-coding 
CPAT coding probability 2.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JAM2-7:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAM2-7:2
3.1 lnc-JAM2-7:2
4.0 lnc-JAM2-7:2
4.1 lnc-JAM2-7:2
5.0 lnc-JAM2-7:2
5.1 lnc-OLIG1-79:2
5.2 lnc-JAM2-7:2