Transcript: lnc-JAM3-3:11

Basic information

LNCipedia transcript ID: lnc-JAM3-3:11 
LNCipedia gene ID: lnc-JAM3-3
Location (hg38): chr11:134032660-134043080
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3650 bp
Exons: 3
Sources: NONCODE v4
Alternative transcript names: NONHSAT025227
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.34 non-coding 
CPAT coding probability 94.86% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-JAM3-3:11 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JAM3-3:11
4.0 lnc-JAM3-3:11
4.1 lnc-JAM3-3:11
5.0 lnc-JAM3-3:11
5.1 lnc-JAM3-3:11
5.2 lnc-JAM3-3:11