Transcript: lnc-JAM3-3:18

Basic information

LNCipedia transcript ID: lnc-JAM3-3:18 
LNCipedia gene ID: lnc-JAM3-3
Location (hg38): chr11:134037239-134045856
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6498 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000204241.3|HBMT00000236666.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -59.34 non-coding 
CPAT coding probability 87.75% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-JAM3-3:18 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-JAM3-3:18
5.0 lnc-JAM3-3:18
5.1 lnc-JAM3-3:18
5.2 lnc-JAM3-3:18