Transcript: lnc-JAM3-3:4

Basic information

LNCipedia transcript ID: lnc-JAM3-3:4 
LNCipedia gene ID: lnc-JAM3-3
Ensembl Gene ID: ENSG00000204241
Ensembl Transcript ID: ENST00000529070
Location (hg38): chr11:134032652-134038975
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1673 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000529070; ENST00000529070.1; RP11-713P17.3-002; OTTHUMT00000393292.1; NONHSAT025225
Alternative gene names: ENSG00000204241; RP11-713P17.3; ENSG00000204241.3; OTTHUMG00000167125.1; ENSG00000204241.7; AP000911.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.3781 non-coding 
CPAT coding probability 11.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JAM3-3:4 no no no no

Available literature

  1. Ding (2014), Expression and clinical significance of the long non-coding RNA PVT1 in human gastric cancer., Onco Targets Ther


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JAM3-2:4
3.1 lnc-JAM3-3:4
4.0 lnc-JAM3-3:4
4.1 lnc-JAM3-3:4
5.0 lnc-JAM3-3:4
5.1 lnc-JAM3-3:4
5.2 lnc-JAM3-3:4