Transcript: lnc-JMJD1C-2:1

Basic information

LNCipedia transcript ID: lnc-JMJD1C-2:1 
LNCipedia gene ID: lnc-JMJD1C-2
Location (hg38): chr10:63873610-63887304
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 564 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; NONCODE v4
Alternative transcript names: ENST00000514645; TCONS_00017737; NONHSAT013615
Alternative gene names: ENSG00000251397; XLOC_008837; linc-JMJD1C-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 3.2914 non-coding 
CPAT coding probability 1.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JMJD1C-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JMJD1C-2:1
3.1 lnc-JMJD1C-2:1
4.0 lnc-JMJD1C-2:1
4.1 lnc-JMJD1C-2:1
5.0 lnc-JMJD1C-2:1
5.1 lnc-C10orf105-78:5
5.2 lnc-JMJD1C-2:1