Transcript: lnc-JMJD7-PLA2G4B-2:11

Basic information

LNCipedia transcript ID: lnc-JMJD7-PLA2G4B-2:11 
LNCipedia gene ID: lnc-JMJD7-PLA2G4B-2
Ensembl Gene ID: ENSG00000174171
Ensembl Transcript ID: ENST00000564432
Location (hg38): chr15:41892793-41898575
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 531 bp
Exons: 4
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000564432.3
Alternative gene names: ENSG00000174171.5; RP11-23P13.6; AC020659.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -100.4171 non-coding 
CPAT coding probability 0.93% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JMJD7-PLA2G4B-2:11 no no no no

Available literature

  1. Bannon (2015), Identification of long noncoding RNAs dysregulated in the midbrain of human cocaine abusers., J. Neurochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-JMJD7-PLA2G4B-2:11
4.1 lnc-JMJD7-PLA2G4B-2:11
5.0 lnc-JMJD7-PLA2G4B-2:11
5.1 lnc-TMEM62-13:10
5.2 lnc-JMJD7-PLA2G4B-2:11