Transcript: lnc-JMJD7-PLA2G4B-5:1

Basic information

LNCipedia transcript ID: lnc-JMJD7-PLA2G4B-5:1 
LNCipedia gene ID: lnc-JMJD7-PLA2G4B-5
Ensembl Gene ID: ENSG00000257797
Ensembl Transcript ID: ENST00000552704
Location (hg38): chr15:42006132-42010117
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 467 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000552704.1; CTD-2382E5.2-001; OTTHUMT00000404542.1; NONHSAT041991
Alternative gene names: ENSG00000257797.1; CTD-2382E5.2; OTTHUMG00000169510.1; AC039056.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -784.1938 non-coding 
CPAT coding probability 2.40% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JMJD7-PLA2G4B-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JMJD7-PLA2G4B-5:1
4.0 lnc-JMJD7-PLA2G4B-5:1
4.1 lnc-JMJD7-PLA2G4B-5:1
5.0 lnc-JMJD7-PLA2G4B-5:1
5.1 lnc-TMEM62-12:1
5.2 lnc-JMJD7-PLA2G4B-5:1