Transcript: lnc-JPH1-5:1

Basic information

LNCipedia transcript ID: lnc-JPH1-5:1 
LNCipedia gene ID: lnc-JPH1-5
Ensembl Gene ID: ENSG00000254238
Ensembl Transcript ID: ENST00000520778
Location (hg38): chr8:75026428-75029460
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 590 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520778.1; RP11-300E4.2-001; OTTHUMT00000379171.1; NONHSAT127305
Alternative gene names: ENSG00000254238.1; RP11-300E4.2; OTTHUMG00000164545.1; AC100782.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -142.2682 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JPH1-5:1 no no no no

Available literature

  1. Peffers (2015), Transcriptome analysis of ageing in uninjured human Achilles tendon., Arthritis Res. Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JPH1-5:1
4.0 lnc-JPH1-5:1
4.1 lnc-JPH1-5:1
5.0 lnc-JPH1-5:1
5.1 lnc-CPA6-111:2
5.2 lnc-JPH1-5:1