Transcript: lnc-JPH3-3:10

Basic information

LNCipedia transcript ID: lnc-JPH3-3:10 
LNCipedia gene ID: lnc-JPH3-3
Location (hg38): chr16:87503714-87515933
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 693 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT144304; FPKM1_group_12094_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -63.2893 non-coding 
CPAT coding probability 5.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JPH3-3:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JPH3-3:10
4.0 lnc-JPH3-3:10
4.1 lnc-JPH3-3:10
5.0 lnc-JPH3-3:10
5.1 lnc-MAP1LC3B-3:21
5.2 lnc-JPH3-3:10