Transcript: lnc-JPH3-3:17

Basic information

LNCipedia transcript ID: lnc-JPH3-3:17 
LNCipedia gene ID: lnc-JPH3-3
Location (hg38): chr16:87493273-87500514
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4012 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000260750.1|ENCT00000161557.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 11.9069 non-coding 
CPAT coding probability 18.65% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JPH3-3:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-JPH3-3:17
5.0 lnc-JPH3-3:17
5.1 lnc-MAP1LC3B-3:12
5.2 lnc-JPH3-3:17