Transcript: lnc-JPH3-3:4

Basic information

LNCipedia transcript ID: lnc-JPH3-3:4 
LNCipedia gene ID: lnc-JPH3-3
RefSeq ID: NR_110943
Location (hg38): chr16:87494187-87515630
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 4
Sources: Broad Institute; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00024257; NR_110943; NR_110943.1
Alternative gene names: XLOC_011821; linc-JPH3-2; LOC101928737


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -61.7427 non-coding 
CPAT coding probability 15.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JPH3-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JPH3-3:1
3.1 lnc-JPH3-3:4
4.0 lnc-JPH3-3:4
4.1 lnc-JPH3-3:4
5.0 lnc-JPH3-3:4
5.1 lnc-MAP1LC3B-3:15
5.2 lnc-JPH3-3:4