Transcript: lnc-JPH3-3:6

Basic information

LNCipedia transcript ID: lnc-JPH3-3:6 
LNCipedia gene ID: lnc-JPH3-3
Location (hg38): chr16:87495552-87518834
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 697 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00024501; NONHSAT144301
Alternative gene names: XLOC_011821; linc-JPH3-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -92.7555 non-coding 
CPAT coding probability 29.92% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JPH3-3:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JPH3-3:3
3.1 lnc-JPH3-3:6
4.0 lnc-JPH3-3:6
4.1 lnc-JPH3-3:6
5.0 lnc-JPH3-3:6
5.1 lnc-MAP1LC3B-3:18
5.2 lnc-JPH3-3:6