Transcript: lnc-JPH4-4:9

Basic information

LNCipedia transcript ID: lnc-JPH4-4:9 
LNCipedia gene ID: lnc-JPH4-4
Ensembl Gene ID: ENSG00000258464
Ensembl Transcript ID: ENST00000554382
Location (hg38): chr14:23729153-23729697
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 545 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000554382; ENST00000554382.1; RP11-388E23.2-002; OTTHUMT00000409983.1; NONHSAT035944
Alternative gene names: ENSG00000258464; RP11-388E23.2; ENSG00000258464.1; OTTHUMG00000170673.1; AL160237.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.6016 non-coding 
CPAT coding probability 3.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JPH4-4:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JPH4-1:9
3.1 lnc-JPH4-1:9
4.0 lnc-JPH4-4:9
4.1 lnc-JPH4-4:9
5.0 lnc-JPH4-4:9
5.1 lnc-EFS-17:9
5.2 lnc-JPH4-4:9