Transcript: lnc-JUN-2:1

Basic information

LNCipedia transcript ID: lnc-JUN-2:1 
LNCipedia gene ID: lnc-JUN-2
Ensembl Gene ID: ENSG00000232453
Ensembl Transcript ID: ENST00000427292
Location (hg38): chr1:58895845-58896703
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 219 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427292; ENST00000427292.1; RP4-794H19.1-002; OTTHUMT00000023041.1; NONHSAT003540
Alternative gene names: ENSG00000232453; RP4-794H19.1; ENSG00000232453.1; OTTHUMG00000008375.1; ENSG00000232453.6; AC105277.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 3.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JUN-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JUN-2:1
3.1 lnc-JUN-2:1
4.0 lnc-JUN-2:1
4.1 lnc-JUN-2:1
5.0 lnc-JUN-2:1
5.1 lnc-C8B-31:14
5.2 lnc-JUN-2:1