Transcript: lnc-JUN-2:6

Basic information

LNCipedia transcript ID: lnc-JUN-2:6 
LNCipedia gene ID: lnc-JUN-2
Ensembl Gene ID: ENSG00000232453
Ensembl Transcript ID: ENST00000635492
Location (hg38): chr1:58882872-58903679
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1293 bp
Exons: 5
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635492.1
Alternative gene names: ENSG00000232453.6; RP4-794H19.1; AC105277.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -161.1769 non-coding 
CPAT coding probability 2.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JUN-2:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-JUN-2:6
4.1 lnc-JUN-2:6
5.0 lnc-JUN-2:6
5.1 lnc-C8B-31:9
5.2 lnc-JUN-2:6