Transcript: lnc-JUN-3:1

Basic information

LNCipedia transcript ID: lnc-JUN-3:1 
LNCipedia gene ID: lnc-JUN-3
Ensembl Gene ID: ENSG00000235215
Ensembl Transcript ID: ENST00000451090
Location (hg38): chr1:59055999-59078116
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 317 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000527; ENST00000451090; ENST00000451090.1; RP11-145M4.2-001; OTTHUMT00000023100.1; NONHSAT003547
Alternative gene names: XLOC_000849; linc-JUN-5; ENSG00000235215; RP11-145M4.2; ENSG00000235215.2; OTTHUMG00000008402.1; AL592431.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -432.6495 non-coding 
CPAT coding probability 30.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JUN-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JUN-3:1
3.1 lnc-JUN-3:1
4.0 lnc-JUN-3:1
4.1 lnc-JUN-3:1
5.0 lnc-JUN-3:1
5.1 lnc-C8B-32:1
5.2 lnc-JUN-3:1