Transcript: lnc-JUN-5:4

Basic information

LNCipedia transcript ID: lnc-JUN-5:4 
LNCipedia gene ID: lnc-JUN-5
Location (hg38): chr1:59131936-59146727
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 963 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000425914; ENST00000425914.1; RP11-470E16.1-001; OTTHUMT00000023101.1
Alternative gene names: ENSG00000224609; RP11-470E16.1; ENSG00000224609.1; OTTHUMG00000008403.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.2956 non-coding 
CPAT coding probability 3.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JUN-5:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-JUN-5:4
3.1 lnc-JUN-5:4
4.0 lnc-JUN-5:4
4.1 lnc-JUN-5:4
5.0 lnc-JUN-5:4
5.1 lnc-C8B-34:20
5.2 lnc-JUN-5:4