Transcript: lnc-JUN-5:5

Basic information

LNCipedia transcript ID: lnc-JUN-5:5 
LNCipedia gene ID: lnc-JUN-5
Ensembl Gene ID: ENSG00000224609
Ensembl Transcript ID: ENST00000425914
Location (hg38): chr1:59131936-59146875
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1111 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT003551; ENST00000425914.2; ENST00000425914.6
Alternative gene names: ENSG00000224609.2; RP11-470E16.1; ENSG00000224609.6; HSD52; AC093425.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -100.2956 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-JUN-5:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-JUN-5:5
4.0 lnc-JUN-5:5
4.1 lnc-JUN-5:5
5.0 lnc-JUN-5:5
5.1 lnc-C8B-34:9
5.2 lnc-JUN-5:5