Transcript: lnc-KANSL1-4:2

Basic information

LNCipedia transcript ID: lnc-KANSL1-4:2 
LNCipedia gene ID: lnc-KANSL1-4
Location (hg38): chr17:45989475-46001809
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2788 bp
Exons: 4
Sources: Nielsen et al.,2014
Alternative transcript names: l_1456_chr17:44066840-44071737_colon
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.7843 non-coding 
CPAT coding probability 22.94% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KANSL1-4:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA1267-4:2
4.0 lnc-KIAA1267-4:2
4.1 lnc-KIAA1267-4:2
5.0 lnc-KIAA1267-4:2
5.1 lnc-GFAP-46:2
5.2 lnc-KANSL1-4:2