Transcript: lnc-KANTR-23:14

Basic information

LNCipedia transcript ID: lnc-KANTR-23:14 
LNCipedia gene ID: lnc-KANTR-23
Location (hg38): chrX:53094157-53142707
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 1063 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000366185; ENST00000366185.2; RP11-258C19.5-001; OTTHUMT00000056728.1
Alternative gene names: ENSG00000232593; RP11-258C19.5; ENSG00000232593.1; OTTHUMG00000021603.1; ENSG00000232593.2; LINC01155; ENSG00000232593.6; KANTR; Spasm


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.2876 non-coding 
CPAT coding probability 0.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KANTR-23:14 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPYL2-1:1
3.1 lnc-TSPYL2-1:1
4.0 KANTR:5
4.1 KANTR:5
5.0 KANTR:5
5.1 lnc-TSR2-23:14
5.2 lnc-KANTR-23:14