Transcript: lnc-KAT7-3:1

Basic information

LNCipedia transcript ID: lnc-KAT7-3:1 
LNCipedia gene ID: lnc-KAT7-3
Ensembl Gene ID: ENSG00000248954
Ensembl Transcript ID: ENST00000515692
Location (hg38): chr17:49887598-49900893
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1816 bp
Exons: 5
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00025182; ENST00000515692; ENST00000515692.1; RP11-304F15.4-001; OTTHUMT00000366203.1; NONHSAT054569
Alternative gene names: XLOC_012236; linc-DLX4-1; ENSG00000248954; RP11-304F15.4; ENSG00000248954.1; OTTHUMG00000161832.1; AC027801.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.9923 non-coding 
CPAT coding probability 22.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KAT7-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KAT7-1:1
3.1 lnc-KAT7-3:1
4.0 lnc-KAT7-3:1
4.1 lnc-KAT7-3:1
5.0 lnc-KAT7-3:1
5.1 lnc-ACSF2-25:1
5.2 lnc-KAT7-3:1