Transcript: lnc-KATNA1-1:1

Basic information

LNCipedia transcript ID: lnc-KATNA1-1:1 
LNCipedia gene ID: lnc-KATNA1-1
Ensembl Gene ID: ENSG00000233330
Ensembl Transcript ID: ENST00000419134
Location (hg38): chr6:149591755-149592663
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 340 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011593; ENST00000419134.1; RP1-12G14.7-001; OTTHUMT00000042649.1; NONHSAT115505
Alternative gene names: XLOC_005875; linc-PPIL4; ENSG00000233330.1; RP1-12G14.7; OTTHUMG00000015793.1; AL078581.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -158.9493 non-coding 
CPAT coding probability 1.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-KATNA1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KATNA1-1:1
3.1 lnc-KATNA1-1:1
4.0 lnc-KATNA1-1:1
4.1 lnc-KATNA1-1:1
5.0 lnc-KATNA1-1:1
5.1 lnc-RAET1G-10:1
5.2 lnc-KATNA1-1:1